post-assembly_analysis:banana_slug_genome_browser
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
post-assembly_analysis:banana_slug_genome_browser [2010/03/31 02:22] galt |
post-assembly_analysis:banana_slug_genome_browser [2010/03/31 02:29] galt |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| * [[http://bananadev.cse.ucsc.edu/|Banana Slug Genome Browser]] will have a UCSC genome browser, once we get to the point of having few enough contigs that building a browser makes sense. | * [[http://bananadev.cse.ucsc.edu/|Banana Slug Genome Browser]] will have a UCSC genome browser, once we get to the point of having few enough contigs that building a browser makes sense. | ||
| - | * [[http://genome.ucsc.edu/admin/mirror.html|Mirroring the UCSC Genome Browser]] shows procedures for setting up a mirror site. | + | * [[http://genome.ucsc.edu/admin/mirror.html|Mirroring the UCSC Genome Browser]] shows procedures for setting up a UCSC Genome Browser site. Although we are not trying to set up a mirror site, this still contains valuable configuration information. |
| * [[http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation|Minimal Browser Install]] instructions are on the ucsc genomewiki. | * [[http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation|Minimal Browser Install]] instructions are on the ucsc genomewiki. | ||
| + | * [[ http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database|Building a new genome database]] on the ucsc genomewiki. | ||
| * [[http://hgdownload.cse.ucsc.edu/admin/jksrc.zip|Source Code]] provides kent source zip. | * [[http://hgdownload.cse.ucsc.edu/admin/jksrc.zip|Source Code]] provides kent source zip. | ||
| * kent/src/product/README* has documentation on configuring and using the UCSC Genome Browser. | * kent/src/product/README* has documentation on configuring and using the UCSC Genome Browser. | ||
| * Internally, the Browser staff uses makeGenome.pl to automate much of the initial build of a browser for a new assembly. The kent source contains that script and other scripts that it calls. | * Internally, the Browser staff uses makeGenome.pl to automate much of the initial build of a browser for a new assembly. The kent source contains that script and other scripts that it calls. | ||
post-assembly_analysis/banana_slug_genome_browser.txt · Last modified: 2015/07/28 06:05 by ceisenhart
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Noncommercial-Share Alike 3.0 Unported
