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--- lecture_notes:06-02-2010 [2010/06/05 17:48]
jstjohn
+++ lecture_notes:06-02-2010 [2010/06/06 22:32] (current)
galt more rationale
@@ Line 1: / Line 1: @@
+====== Sea Hare and Panda ======
+Looking at recent successful de-novo assemblies can help inform future sequencing and assembly plans for the Banana Slug.
+===== Sea Hare =====
+  Sea Hare is interesting because it is a recent de-novo mollusc assembly using 454 mate-pairs.
   * Analyzing data from previously sequenced mollusk genomes
     * Broad institute /ftp/pub/assemblies/invertebrates/aplysia (seahare)
@@ Line 26: / Line 34: @@
     * Estimate error after mapping.
     * These two measures should be correlated to each other.
+===== Panda =====
+  Panda is interesting because it is a recent de-novo assembly of a large
+  genome of approximately the same size as banana slug (3Gb).  It is also
+  done using SOAPdenovo which we were able to use to assemble our slug data.
+  Panda is also the only known large genome yet assembled de-novo using
+  only Illumina/Solexa reads.
 Panda Genome statistics

Banana Slug Genomics