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lecture_notes:05-27-2015

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lecture_notes:05-27-2015 [2015/05/28 05:23]
emfeal
lecture_notes:05-27-2015 [2015/05/28 05:27]
emfeal
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 ==== Repeat Annotation ==== ==== Repeat Annotation ====
   * Different types of repeats can be studied along with their levels of activity (evolutionary analyses)   * Different types of repeats can be studied along with their levels of activity (evolutionary analyses)
-=== Types of Repeats ===+ === Types of Repeats ===
   * low-complexity sequence: microsatellites,​ homopolymers,​ etc.   * low-complexity sequence: microsatellites,​ homopolymers,​ etc.
-== Transposable Elements ==+  ​== Transposable Elements ==
   * class 1: retrotransposon;​ "copy & paste";​ LTR, LINES, SINES   * class 1: retrotransposon;​ "copy & paste";​ LTR, LINES, SINES
   * class 2: DNA transposons;​ "cut & paste";​ subclass 1 and subclass 2   * class 2: DNA transposons;​ "cut & paste";​ subclass 1 and subclass 2
-=== Repeat Content ===+ === Repeat Content ===
   * Does not necessarily correlate with genome size   * Does not necessarily correlate with genome size
   * some correlation within the same group   * some correlation within the same group
-=== Tools ===+ === Tools ===
   * Homology: RepeatMasker   * Homology: RepeatMasker
   * denovo: RepeatModeler,​ WindowMasker,​ RepeatScout,​ Piler   * denovo: RepeatModeler,​ WindowMasker,​ RepeatScout,​ Piler
lecture_notes/05-27-2015.txt ยท Last modified: 2015/05/28 05:48 by emfeal