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lecture_notes:05-27-2011 [2011/05/27 21:24] eyliaw |
lecture_notes:05-27-2011 [2011/05/27 21:25] eyliaw |
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* Try mapping with Newbler or BWA. | * Try mapping with Newbler or BWA. | ||
* BLAST/BLAT it. | * BLAST/BLAT it. | ||
- | * SOAPdenovo assembly: | + | * SOAPdenovo assembly try 1: |
- | * Level 1: Illumina data for contig building. | + | * Only on Illumina data |
+ | * try 2: | ||
+ | * Level 1: All Illumina data for contig building. | ||
* Level 2: 454 data for scaffolding. | * Level 2: 454 data for scaffolding. | ||
+ | * |