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lecture_notes:05-27-2011 [2011/05/27 21:11] eyliaw |
lecture_notes:05-27-2011 [2011/05/27 21:50] eyliaw |
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====== To Do ====== | ====== To Do ====== | ||
- | We went over some things that need updating in the wiki. | + | We went over some things that need updating in the wiki and plans for this weekend. |
* Document scripts added in [[computer_resources:bin|bin]] folder. | * Document scripts added in [[computer_resources:bin|bin]] folder. | ||
- | * | + | |
+ | |||
+ | * Find out which lanes in 454 run 3 are banana slug runs. | ||
+ | * Try mapping with Newbler or BWA. | ||
+ | * BLAST/BLAT it. | ||
+ | * SOAPdenovo assembly try 1: | ||
+ | * Only on Illumina data as level 3 | ||
+ | * try 2: | ||
+ | * Level 3: All Illumina data for contig building. | ||
+ | * Level 2: 454 data for scaffolding. | ||
+ | * Find insert lengths for the Quake corrected Illumina data. | ||
+ | * [[http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi#SG5|Invertebrate mitochondrial translation table]] |