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lecture_notes:05-27-2011 [2011/05/27 21:11] eyliaw |
lecture_notes:05-27-2011 [2011/05/27 21:24] eyliaw |
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We went over some things that need updating in the wiki. | We went over some things that need updating in the wiki. | ||
* Document scripts added in [[computer_resources:bin|bin]] folder. | * Document scripts added in [[computer_resources:bin|bin]] folder. | ||
- | * | + | * Find out which lanes in 454 run 3 are banana slug runs. |
+ | * Try mapping with Newbler or BWA. | ||
+ | * BLAST/BLAT it. | ||
+ | * SOAPdenovo assembly: | ||
+ | * Level 1: Illumina data for contig building. | ||
+ | * Level 2: 454 data for scaffolding. |