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lecture_notes:05-16-2011

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lecture_notes:05-16-2011 [2011/05/16 15:28]
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lecture_notes:05-16-2011 [2011/05/16 15:42]
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     = -10 * log_10(1-P(Y=x|Xi=x))     = -10 * log_10(1-P(Y=x|Xi=x))
  
-Quality of an alignment: ​ Q1 (quality of read 1), Q2 (quality of read 2), Qa (alignment quality: agree and disagree).+Quality of an alignment: ​ Q1 (quality of read 1), Q2 (quality of read 2), Qa (alignment quality).
  
 If we assume that the alignment is perfect: If we assume that the alignment is perfect:
   * Bases 1 and 2 agree: Q1 + Q2   * Bases 1 and 2 agree: Q1 + Q2
   * Bases 1 and 2 disagree: Q1 - Q2?   * Bases 1 and 2 disagree: Q1 - Q2?
lecture_notes/05-16-2011.txt ยท Last modified: 2011/06/12 17:40 by karplus