Banana Slug Genomics

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=====SGA update===== * SGA is a memory efficient assembler * It was possible to compute more compressed data * The pipeline changed, since it was not easy to figure out how to run it * It was necessary to make sure the parameters are running * The group assembled one dataset, merged together * SGA indexed each dataset separated * Merging is complicated in a pairwise fashion, then two pairs were merged at a time * Indexing all three sistinct submissions * Pre-processed adapter trimming * Duplicate-removal is later than indexing * One issue the group found: SW018 and 19, same library are optical PCR duplicates that should be removed