lecture_notes:05-15-2015
**This is an old revision of the document!** ----
A PCRE internal error occured. This might be caused by a faulty plugin
=====SGA update===== * SGA is a memory efficient assembler *It was possible to compute more compressed data *The pipeline changed, since it was not easy to figure out how to run it *It was necessary to make sure the parameters are running -The group assembled one dataset, merged together -SGA indexed each dataset separated -Merging is complicated in a pairwise fashion, then two pairs were merged at a time -Indexing all three sistinct submissions -Pre-processed adapter trimming -Duplicate-removal is later than indexing -One issue the group found: SW018 and 19, same library are optical PCR duplicates that should be removed
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lecture_notes/05-15-2015.1431961327.txt.gz · Last modified: 2015/05/18 15:02 by gepoliano
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