Banana Slug Genomics

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* A brief outline of PCAP program and the results obtained from PCAP assembly on Pog 454 data were shown by Shyamini. * Presentation slides in pdf format are posted {{:lecture_notes:pcap_ppt.pdf|here}}. * Article - "Generating Genome Assembly with PCAP" describes the major and minor programs used to run PCAP, their default parameters, the output files, and a brief description of the program. The link to the article is {{:lecture_notes:pcap.pdf|here}}. * Another article - "PCAP: A Whole-Genome Assembly Program" published in Genome Research 2003, describes the algorithm behind the program PCAP. Link to the article is [[http://genome.cshlp.org/content/13/9/2164.full#T1|here]].