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lecture_notes:05-12-2010 [2010/05/18 01:12] svasili created |
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- | A brief outline of PCAP algorithm and the results obtained from PCAP assembly of Pog 454 data were shown. | + | * A brief outline of PCAP program, and the results obtained from PCAP assembly on Pog 454 data were shown by Shyamini. |
+ | * Presentation slides in pdf format are posted {{:lecture_notes:pcap_ppt.pdf|here}}. | ||
+ | * Article - "Generating Genome Assembly with PCAP" describes the major and minor programs used to run PCAP, their default parameters, the output files, and a brief description of the program. The link to the article is {{:lecture_notes:pcap.pdf|here}}. | ||
+ | * Another article - "PCAP: A Whole-Genome Assembly Program" published in Genome Research 2003, describes the algorithm behind the program PCAP. Link to the article is [[http://genome.cshlp.org/content/13/9/2164.full#T1|here]]. | ||
- | Presentation slides in pdf format are posted {{:lecture_notes:pcap_ppt.pdf|here}} | ||