lecture_notes:05-07-2010
Differences
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lecture_notes:05-07-2010 [2010/05/21 20:36] galt created |
lecture_notes:05-07-2010 [2010/05/21 20:46] (current) galt |
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| - | bme235-2010-05-07 | + | ====== Approximate Searching and BWA ====== |
| + | |||
| + | ===== Class Business ===== | ||
| 2nd homework will be due. | 2nd homework will be due. | ||
| Line 48: | Line 50: | ||
| Can look in trim9.chr19-delete.rdb and -invert.rdb. | Can look in trim9.chr19-delete.rdb and -invert.rdb. | ||
| - | 1,1 Top | ||
| Nader: | Nader: | ||
| Line 61: | Line 62: | ||
| 100X and 60X of it is duplicates. | 100X and 60X of it is duplicates. | ||
| - | Approximate Search/Matching | + | ===== Approximate Search/Matching ===== |
| - | ========================== | + | |
| 3 things: | 3 things: | ||
| Line 102: | Line 102: | ||
| 39 milliion readpairs in Python. | 39 milliion readpairs in Python. | ||
| Didn't want to have to do full alignments. | Didn't want to have to do full alignments. | ||
| - | |||
| - | 54,1 25% | ||
| Exact match on the k-mer. | Exact match on the k-mer. | ||
lecture_notes/05-07-2010.1274474217.txt.gz · Last modified: 2010/05/21 20:36 by galt
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