This shows you the differences between two versions of the page.
lecture_notes:05-07-2010 [2010/05/21 20:36] galt created |
lecture_notes:05-07-2010 [2010/05/21 20:46] galt |
||
---|---|---|---|
Line 1: | Line 1: | ||
- | bme235-2010-05-07 | + | ====== Approximate Searching and BWA ====== |
+ | |||
+ | ===== Class Business ===== | ||
2nd homework will be due. | 2nd homework will be due. | ||
Line 48: | Line 50: | ||
Can look in trim9.chr19-delete.rdb and -invert.rdb. | Can look in trim9.chr19-delete.rdb and -invert.rdb. | ||
- | 1,1 Top | ||
Nader: | Nader: | ||
Line 61: | Line 62: | ||
100X and 60X of it is duplicates. | 100X and 60X of it is duplicates. | ||
- | Approximate Search/Matching | + | ===== Approximate Search/Matching ===== |
- | ========================== | + | |
3 things: | 3 things: | ||
Line 102: | Line 102: | ||
39 milliion readpairs in Python. | 39 milliion readpairs in Python. | ||
Didn't want to have to do full alignments. | Didn't want to have to do full alignments. | ||
- | |||
- | 54,1 25% | ||
Exact match on the k-mer. | Exact match on the k-mer. |