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lecture_notes:05-07-2010

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lecture_notes:05-07-2010 [2010/05/21 13:36]
galt created
lecture_notes:05-07-2010 [2010/05/21 13:46]
galt
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-bme235-2010-05-07+====== Approximate Searching and BWA ====== 
 + 
 +===== Class Business =====
  
 2nd homework will be due. 2nd homework will be due.
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 Can look in trim9.chr19-delete.rdb and -invert.rdb. Can look in trim9.chr19-delete.rdb and -invert.rdb.
  
-                                                                                                                          1,1           Top 
  
 Nader: Nader:
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 100X and 60X of it is duplicates. 100X and 60X of it is duplicates.
  
-Approximate Search/​Matching +===== Approximate Search/​Matching ​=====
-==========================+
  
 3 things: 3 things:
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 39 milliion readpairs in Python. 39 milliion readpairs in Python.
 Didn't want to have to do full alignments. Didn't want to have to do full alignments.
- 
-                                                                                                                          54,1          25% 
  
 Exact match on the k-mer. Exact match on the k-mer.
lecture_notes/05-07-2010.txt · Last modified: 2010/05/21 13:46 by galt