lecture_notes:05-03-2010
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lecture_notes:05-03-2010 [2010/05/03 22:14] hyjkim created |
lecture_notes:05-03-2010 [2010/05/09 01:11] (current) galt Putting the Heng Li and R. Durbin paper in a proper reference format with link |
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| - Biological tricks: | - Biological tricks: | ||
| - c->b->a->b'->d | - c->b->a->b'->d | ||
| - | - an inversion of b->a->b' turns the scaffold into c->b->a'->b'->d | + | - an inversion of b->a->b' turns the scaffold into c->b->a'->b'->d... Note that flipping b->a->b' reverses and complements the sequences, so that it becomes (b')->a'->b' or b->a'->b'. |
| Burrows-Wheeler Transform (BWT) | Burrows-Wheeler Transform (BWT) | ||
| Line 95: | Line 95: | ||
| - R-("O") = c(O) + O("O") + 1 = 6 | - R-("O") = c(O) + O("O") + 1 = 6 | ||
| - R_("GO") = | - R_("GO") = | ||
| - | - Kevin recommends reading the paper. [Fast and Accurate Short read alignment with Burrows-Wheeler Transform, Heng Li and Richard Durbin, bioinformatics 2009] | + | - Kevin recommends reading the paper. **Fast and accurate short read alignment with Burrows-Wheeler transform.**[(cite:bwa>Heng Li and Richard Durbin.\\ |
| + | Bioinformatics. 2009 Jul 15;25(14):1754-60. Epub 2009 May 18.\\ | ||
| + | Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK.\\ | ||
| + | doi:[[http://dx.doi.org/10.1093/bioinformatics/btp324|10.1093/bioinformatics/btp324]] | ||
| + | )] | ||
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| + | ===== References ===== | ||
| + | <refnotes>notes-separator: none</refnotes> | ||
| + | ~~REFNOTES cite~~ | ||
| + | |||
lecture_notes/05-03-2010.1272924859.txt.gz · Last modified: 2010/05/03 22:14 by hyjkim
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