lecture_notes:04-28-2010
Differences
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lecture_notes:04-28-2010 [2010/05/02 16:15] karplus fixed number of contigs for Newbler |
lecture_notes:04-28-2010 [2010/05/02 16:22] (current) karplus added workaround for campusrocks filesystem problem |
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| === Misc Notes: === | === Misc Notes: === | ||
| - | **campusrocks is broken!** | + | **campusrocks is broken!** The head node has the file system mounted as /campusdata, but the client nodes have it mounted as /campus. The workaround is to use the trick in assemblies/Pog/map-colorspace5/Makefile |
| + | <code> | ||
| + | CWD ?= $(subst campusdata,campus,$(shell pwd)) | ||
| + | </code> | ||
| + | Then instead of | ||
| + | <code> | ||
| + | qsub -cwd | ||
| + | </code> use | ||
| + | <code> | ||
| + | qsub -wd ${CWD} | ||
| + | </code> | ||
| //Pog// has 2 repeats: ~1k & 1.1k \\ | //Pog// has 2 repeats: ~1k & 1.1k \\ | ||
lecture_notes/04-28-2010.1272816923.txt.gz · Last modified: 2010/05/02 16:15 by karplus
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