lecture_notes:04-26-2010
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lecture_notes:04-26-2010 [2010/04/26 22:22] hyjkim created |
lecture_notes:04-26-2010 [2010/04/28 20:19] galt |
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| Galt's lecture on velvet | Galt's lecture on velvet | ||
| * A lot of parameters with velvet to work with | * A lot of parameters with velvet to work with | ||
| - | * Easy to install compared to other tools like allopaths | + | * Easy to install compared to other tools like allpaths |
| * /campus/BME235/programs/velvet/ is the home directory | * /campus/BME235/programs/velvet/ is the home directory | ||
| * To install, simply type 'make' | * To install, simply type 'make' | ||
| * Copy binaries | * Copy binaries | ||
| * Can change the max-kmer maximum size at compilation | * Can change the max-kmer maximum size at compilation | ||
| - | * 31mers are max six for a 64-bit word | + | * 31mers are max size for a 64-bit word |
| * Can add solid support by adding in a "de" tag for double-encoded | * Can add solid support by adding in a "de" tag for double-encoded | ||
| * Velvet is one of the only tools supporting colorspace reads | * Velvet is one of the only tools supporting colorspace reads | ||
lecture_notes/04-26-2010.txt ยท Last modified: 2010/04/28 20:56 by galt
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