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lecture_notes:04-20-2015

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lecture_notes:04-20-2015 [2015/04/25 03:01]
calef [Installation]
lecture_notes:04-20-2015 [2015/04/25 03:03]
calef [User experience]
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   * Requires an array of other scripts in other languages   * Requires an array of other scripts in other languages
   * Most of high level scripts are written in perl   * Most of high level scripts are written in perl
-  * Tested ​the program in small dataset ​and obtained contigs+  * Runs from a shell script and a user-provided config file 
 +  * SGE-aware, handles qsub and monitoring jobs 
 +  * Pipeline is well sub-divided,​ running ​the program ​produces intermediate files and executables allowing the user to suspend, resume, or restart the run from any step in the pipeline 
 +  * Thorough error logging for each step in the algorithm 
 +  * Tested the program with the packaged test data and obtained contigs
 =====Installation===== =====Installation=====
   * Main issue was new version of GCC and getting all the dependencies together ~16 hrs    * Main issue was new version of GCC and getting all the dependencies together ~16 hrs 
lecture_notes/04-20-2015.txt · Last modified: 2015/04/25 03:07 by calef