lecture_notes:04-20-2015
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lecture_notes:04-20-2015 [2015/04/25 03:03] calef [User experience] |
lecture_notes:04-20-2015 [2015/04/25 03:04] calef [User experience] |
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| * Requires an array of other scripts in other languages | * Requires an array of other scripts in other languages | ||
| * Most of high level scripts are written in perl | * Most of high level scripts are written in perl | ||
| - | * Runs from a shell script and a user-provided config file | ||
| - | * SGE-aware, handles qsub and monitoring jobs | ||
| - | * Pipeline is well sub-divided, running the program produces intermediate files and executables allowing the user to suspend, resume, or restart the run from any step in the pipeline | ||
| - | * Thorough error logging for each step in the algorithm | ||
| * Tested the program with the packaged test data and obtained contigs | * Tested the program with the packaged test data and obtained contigs | ||
| =====Installation===== | =====Installation===== | ||
lecture_notes/04-20-2015.txt ยท Last modified: 2015/04/25 03:07 by calef
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