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lecture_notes:04-18-2011 [2011/04/19 06:33] eyliaw |
lecture_notes:04-18-2011 [2011/04/19 06:33] eyliaw |
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- | ====== Game plan ====== | + | ====== Game Plan ====== |
- | Today, Kevin outlined the steps we should take to evaluate the data we have now. We currently have 454 contigs built with [[bioinformatic_tools:gs_de_novo_assembler|Newbler]] (but with a high error rate, so likely repeat regions were being joined). The 454 data has poor coverage as well, but may work well as a starting point for [[bioinformatic_tools:price|PRICE]], using Illumina data to extend them. | + | Kevin outlined the steps we should take to evaluate the data we have now. We currently have 454 contigs built with [[bioinformatic_tools:gs_de_novo_assembler|Newbler]] (but with a high error rate, so likely repeat regions were being joined). The 454 data has poor coverage as well, but may work well as a starting point for [[bioinformatic_tools:price|PRICE]], using Illumina data to extend them. |
So, our next steps are to: | So, our next steps are to: |