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lecture_notes:04-16-2010 [2010/04/20 03:04] karplus added python2.6.5 |
lecture_notes:04-16-2010 [2010/04/20 03:09] (current) karplus fixed punctuation that was messing up final list |
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* Its better to run the tool in the current working directory. | * Its better to run the tool in the current working directory. | ||
* Create a README file in each new directory and it should contain all the necessary stuff required to run the assembly tool. | * Create a README file in each new directory and it should contain all the necessary stuff required to run the assembly tool. | ||
- | * Create Makefile for each assembly tool. (Makefile for newbler_assembly tool is in /campusdata/BME235/assemblies/Pog//newbler-assembly1/). You can use it as a template and modify the data source and the expected coverage as required. Makefile should be considered as "a book for lab protocols". | + | * Create Makefile for each assembly tool. (Makefile for newbler_assembly tool is in /campusdata/BME235/assemblies/Pog/newbler-assembly1/ ). You can use it as a template and modify the data source and the expected coverage as required. Makefile should be considered as "a book for lab protocols". |
- | * Its always better to say append to make.log in Makefile. | + | * It is always better to say append to make.log in Makefile. |
* Wiki page for assembly tools should contain a summary of how to run the tool and other things that might be useful to look at. | * Wiki page for assembly tools should contain a summary of how to run the tool and other things that might be useful to look at. | ||