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lecture_notes:04-16-2010

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lecture_notes:04-16-2010 [2010/04/20 03:04]
karplus added python2.6.5
lecture_notes:04-16-2010 [2010/04/20 03:09] (current)
karplus fixed punctuation that was messing up final list
Line 58: Line 58:
   * Its better to run the tool in the current working directory. ​   * Its better to run the tool in the current working directory. ​
   * Create a README file in each new directory and it should contain all the necessary stuff required to run the assembly tool.    * Create a README file in each new directory and it should contain all the necessary stuff required to run the assembly tool. 
-  * Create Makefile for each assembly tool. (Makefile for newbler_assembly tool is in /​campusdata/​BME235/​assemblies/​Pog//​newbler-assembly1/​). You can use it as a template and modify the data source and the expected coverage as required. Makefile should be considered as "a book for lab protocols"​.  +  * Create Makefile for each assembly tool. (Makefile for newbler_assembly tool is in /​campusdata/​BME235/​assemblies/​Pog/​newbler-assembly1/​ ). You can use it as a template and modify the data source and the expected coverage as required. Makefile should be considered as "a book for lab protocols"​. 
-  * Its always better to say append to make.log in Makefile. ​+  * It is always better to say append to make.log in Makefile. ​
   * Wiki page for assembly tools should contain a summary of how to run the tool and other things that might be useful to look at.   * Wiki page for assembly tools should contain a summary of how to run the tool and other things that might be useful to look at.
  
lecture_notes/04-16-2010.1271732688.txt.gz · Last modified: 2010/04/20 03:04 by karplus