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lecture_notes:04-16-2010 [2010/04/16 23:00] svasili |
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* Kevin ran the assembly tool on POG 454 data under /campusdata/BME235/assemblies/Pog. | * Kevin ran the assembly tool on POG 454 data under /campusdata/BME235/assemblies/Pog. | ||
* The README file in the directory contains important information about the assembly. | * The README file in the directory contains important information about the assembly. | ||
- | * Info about tools installed is listed in bioinformatic_tools [[https://banana-slug.soe.ucsc.edu/bioinformatic_tools:gs_de_novo_assembler | GS De Novo Assembler]]. | + | * Info about tools installed is listed in bioinformatic_tools [[https://banana-slug.soe.ucsc.edu/bioinformatic_tools:gs_de_novo_assembler | GS De Novo Assembler]]. Info about how to run the De novo as well as Mapping assembly tools is also included there. |
+ | * Currently tools are installed under /campusdata/BME235/bin/old_Newbler/. | ||
+ | * Tools with prefix "gs" are not supposed to be run directly. | ||