lecture_notes:04-09-2010
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lecture_notes:04-09-2010 [2010/04/11 22:29] learithe |
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| Take fix mode script from /projects/compbio/bin/scripts and replace protein user group with BME 235 user group. | Take fix mode script from /projects/compbio/bin/scripts and replace protein user group with BME 235 user group. | ||
| - | Next week will have a reference genome (//Pyrobaculum oguniense//, aka "//Pog//") to use for testing the tools on. | + | Next week will have a reference genome (//Pyrobaculum oguniense//, aka //"Pog"//) to use for testing the tools on. |
| - | For the most part POG is done; however, there are still some uncertainty with 8 SNPs left. It is definitely past the MIAMI standard at this point. | + | For the most part Pog is done; however, there are still some uncertainty with 8 SNPs left. It is definitely past the MIAMI standard at this point. |
| Note about sequencing platform quality scores: most platforms are trying to use the phred quality score((http://en.wikipedia.org/wiki/Phred_quality_score)), so the quality score is comparable between the platforms and runs | Note about sequencing platform quality scores: most platforms are trying to use the phred quality score((http://en.wikipedia.org/wiki/Phred_quality_score)), so the quality score is comparable between the platforms and runs | ||
lecture_notes/04-09-2010.txt · Last modified: 2010/04/12 21:37 by cbrumbau
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