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lecture_notes:04-07-2011

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lecture_notes:04-07-2011 [2011/04/08 08:59]
eyliaw [Hash Algorithm]
lecture_notes:04-07-2011 [2015/07/28 08:12] (current)
149.155.218.110 ↷ Links adapted because of a move operation
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 ====== Jellyfish ====== ====== Jellyfish ======
-We talked about the [[bioinformatic_tools:​jellyfish|Jellyfish]] tool.  Details of the space-efficient algorithm were explained, and we looked at how to schedule a run on the Campusrocks cluster.+We talked about the [[archive:bioinformatic_tools:​jellyfish|Jellyfish]] tool.  Details of the space-efficient algorithm were explained, and we looked at how to schedule a run on the Campusrocks cluster.
  
 ===== Scheduling a run on Campusrocks ===== ===== Scheduling a run on Campusrocks =====
-jellyfish -m 22 -o output -c 3+Examples:
  
-qsub -hard -l num_proc=jellyfish_script+Jellyfish ex. args: jellyfish -m 22 -o output -c 3 
 + 
 +Scheduling process args: qsub -hard -l num_proc=jellyfish_script
  
 ===== Hash Algorithm ===== ===== Hash Algorithm =====
lecture_notes/04-07-2011.1302278365.txt.gz · Last modified: 2011/04/08 08:59 by eyliaw