lecture_notes:04-07-2011
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lecture_notes:04-07-2011 [2011/04/08 15:59] eyliaw [Scheduling a run on Campusrocks] |
lecture_notes:04-07-2011 [2015/07/28 15:12] (current) 149.155.218.110 ↷ Links adapted because of a move operation |
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| ====== Jellyfish ====== | ====== Jellyfish ====== | ||
| - | We talked about the [[bioinformatic_tools:jellyfish|Jellyfish]] tool. Details of the space-efficient algorithm were explained, and we looked at how to schedule a run on the Campusrocks cluster. | + | We talked about the [[archive:bioinformatic_tools:jellyfish|Jellyfish]] tool. Details of the space-efficient algorithm were explained, and we looked at how to schedule a run on the Campusrocks cluster. |
| ===== Scheduling a run on Campusrocks ===== | ===== Scheduling a run on Campusrocks ===== | ||
| - | Examples | + | Examples: |
| - | jellyfish -m 22 -o output -c 3 | + | Jellyfish ex. args: jellyfish -m 22 -o output -c 3 |
| - | qsub -hard -l num_proc=8 jellyfish_script | + | Scheduling process args: qsub -hard -l num_proc=8 jellyfish_script |
| ===== Hash Algorithm ===== | ===== Hash Algorithm ===== | ||
lecture_notes/04-07-2011.1302278388.txt.gz · Last modified: 2011/04/08 15:59 by eyliaw
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