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lecture_notes:04-07-2010

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lecture_notes:04-07-2010 [2010/04/09 12:51]
galt
lecture_notes:04-07-2010 [2010/04/09 12:54]
galt
Line 190: Line 190:
 === Quality === === Quality ===
  
-  * Base-space and color-space ​comes with quality scores+Base-space, flow-space, ​and color-space ​all come with quality scores.
-  * Flowspace does not have such? have to check. +
-  * SFS format is the flowspace format for input into the Newbler assembler. It has quality scores for each base using standard -log10 probability.+
  
 +SFF format is the flowspace format for input into the Newbler assembler. It has quality scores for each base using standard -log10 probability.
 ([[http://​www.ncbi.nlm.nih.gov/​Traces/​trace.cgi?​cmd=show&​f=formats&​m=doc&​s=format#​sff|SFF format]]) ([[http://​www.ncbi.nlm.nih.gov/​Traces/​trace.cgi?​cmd=show&​f=formats&​m=doc&​s=format#​sff|SFF format]])
  
lecture_notes/04-07-2010.txt · Last modified: 2015/09/14 11:40 by 68.180.230.228