lecture_notes:04-07-2010
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lecture_notes:04-07-2010 [2010/04/09 14:21] karplus added correction for mistake I made in class about meaning of quality |
lecture_notes:04-07-2010 [2010/04/09 19:51] galt |
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| === Quality === | === Quality === | ||
| - | * Base-space and color-space comes with quality scores. | + | * Base-space and color-space comes with quality scores. |
| - | * Flowspace does not have such? have to check. | + | * Flowspace does not have such? have to check. |
| - | * SFS format is the flowspace format for input into the Newbler assembler. Does it have any independent quality measurement? | + | * SFF format is the flowspace format for input into the Newbler assembler. It has quality scores for each base using standard -log10 probability. |
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| + | ([[http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff|SFF format]]) | ||
| A large number of the assemblers throw away the quality data or only use it later. Some use it to just throw away reads with low quality. | A large number of the assemblers throw away the quality data or only use it later. Some use it to just throw away reads with low quality. | ||
lecture_notes/04-07-2010.txt · Last modified: 2015/09/14 18:40 by 68.180.230.228
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