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lecture_notes:04-05-2010

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lecture_notes:04-05-2010 [2010/04/11 19:03]
learithe
lecture_notes:04-05-2010 [2010/04/13 07:27]
learithe
Line 70: Line 70:
       * Expect half your reads to have an error in them.       * Expect half your reads to have an error in them.
   * Contiguous chromosomes with a low error rate ( output from assemblers).   * Contiguous chromosomes with a low error rate ( output from assemblers).
-    * Miami standard for a finished genome should have an error rate of 1 x 10^-5 bases.+    * Miami standard for a finished genome should have an error rate of 1 x 10^-5 bases. ​FIXME
     * To reduce error rate in short reads, stack up many reads and take the most common base at each position.     * To reduce error rate in short reads, stack up many reads and take the most common base at each position.
   * How much data do we have?   * How much data do we have?
lecture_notes/04-05-2010.txt ยท Last modified: 2010/04/15 18:16 by karplus