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lecture_notes:04-05-2010

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lecture_notes:04-05-2010 [2010/04/10 11:22]
galt
lecture_notes:04-05-2010 [2010/04/15 17:46]
learithe
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   * SOLiD System Tools (Corona_lite,​ etc): Hyunsung and Chris   * SOLiD System Tools (Corona_lite,​ etc): Hyunsung and Chris
   * Newbler documentation:​ Galt and Herbert   * Newbler documentation:​ Galt and Herbert
-  * SOAPdenovo: Galt and ?+  * SOAPdenovo: Galt and Jenny
  
  
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       * Expect half your reads to have an error in them.       * Expect half your reads to have an error in them.
   * Contiguous chromosomes with a low error rate ( output from assemblers).   * Contiguous chromosomes with a low error rate ( output from assemblers).
-    * Miami standard for a finished genome should have an error rate of 1 x 10^-5 bases.+    * Bermuda ​standard for a finished genome should have an error rate of 1 x 10^-5 bases. ​(see comment below)
     * To reduce error rate in short reads, stack up many reads and take the most common base at each position.     * To reduce error rate in short reads, stack up many reads and take the most common base at each position.
   * How much data do we have?   * How much data do we have?
lecture_notes/04-05-2010.txt ยท Last modified: 2010/04/15 18:16 by karplus