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lecture_notes:04-05-2010 [2010/04/07 19:00] galt |
lecture_notes:04-05-2010 [2010/04/13 14:27] learithe |
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* SOLiD System Tools (Corona_lite, etc): Hyunsung and Chris | * SOLiD System Tools (Corona_lite, etc): Hyunsung and Chris | ||
* Newbler documentation: Galt and Herbert | * Newbler documentation: Galt and Herbert | ||
+ | * SOAPdenovo: Galt and Jenny | ||
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* Expect half your reads to have an error in them. | * Expect half your reads to have an error in them. | ||
* Contiguous chromosomes with a low error rate ( output from assemblers). | * Contiguous chromosomes with a low error rate ( output from assemblers). | ||
- | * Miami standard for a finished genome should have an error rate of 1 x 10^-5 bases. | + | * Miami standard for a finished genome should have an error rate of 1 x 10^-5 bases. FIXME |
* To reduce error rate in short reads, stack up many reads and take the most common base at each position. | * To reduce error rate in short reads, stack up many reads and take the most common base at each position. | ||
* How much data do we have? | * How much data do we have? |