lecture_notes:04-05-2010
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lecture_notes:04-05-2010 [2010/04/07 18:27] galt |
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| + | Assembly Review Articles: | ||
| + | * [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WG1-4YJ6GD8-1&_user=10&_coverDate=03%2F06%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=1282691739&_rerunOrigin=google&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=32c08d11cc10fd1eefca0f8a8def738b|Assembly algorithms for next-generation sequencing data]] | ||
| - | [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WG1-4YJ6GD8-1&_user=10&_coverDate=03%2F06%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=1282691739&_rerunOrigin=google&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=32c08d11cc10fd1eefca0f8a8def738b|Review Article]] | + | Jason R. Miller, Sergey Koren and Granger Suttona |
| - | Assembly algorithms for next-generation sequencing data | + | Covers these assemblers: SSAKE, SHARCGS, VCAKE, Newbler, Celera Assembler, Euler, Velvet, ABySS, AllPaths, and SOAPdenovo. |
| - | Jason R. Miller, Sergey Korena and Granger Suttona | + | Compares de Bruijn graph to overlap/layout/consensus. |
| + | |||
| + | Jason R. Miller, Sergey Koren, Granger Sutton, Assembly algorithms for next-generation sequencing data, Genomics, In Press, Corrected Proof, Available online 6 March 2010, ISSN 0888-7543, DOI: 10.1016/j.ygeno.2010.03.001. | ||
| + | (http://www.sciencedirect.com/science/article/B6WG1-4YJ6GD8-1/2/ae6c957910e4ea658cdebff4a0ce9793) | ||
| + | Keywords: Genome assembly algorithms; Next-generation sequencing | ||
| - | SSAKE, SHARCGS, VCAKE, Newbler, Celera Assembler, Euler, Velvet, ABySS, AllPaths, and SOAPdenovo. | ||
| - | More generally, it compares the two standard methods known as the de Bruijn graph approach and the overlap/layout/consensus approach to assembly. | ||
| =====Assembly Overview===== | =====Assembly Overview===== | ||
lecture_notes/04-05-2010.txt · Last modified: 2010/04/16 01:16 by karplus
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