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lecture_notes:03-30-2011

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Brief overview of goals and data input characteristics

Kevin laid out some of the logistics of the class.

A broad goal: For each chromosome in the slug, we want the full sequence in DNA bases. Since it is unlikely to be completed in the timeframe of one quarter, some smaller goals: build contigs and have an idea of the scaffold to arrange the contigs in.

Inputs: Sequencing data from various machines. Some of the characteristics of these machines/techniques:

  • Sanger capillary
  • 454
  • SoLiD
  • Illumina
  • *
  • Ion Torrent
  • Pac Bio
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lecture_notes/03-30-2011.1301526310.txt.gz · Last modified: 2011/03/30 16:05 by eyliaw