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The raw data locations are listed below. However many of these files have been processed through Skewer/fastUniq and a variety of other programs. To see and download these 'processed' files please view the data set page. | The raw data locations are listed below. However many of these files have been processed through Skewer/fastUniq and a variety of other programs. To see and download these 'processed' files please view the data set page. | ||
- | | Data set | Description | Location | | ||
- | | [[data_overview::MiSeq data| MiSeq data SW019_S1_L001]] | 2x300bp reads from a single MiSeq lane | | ||
- | | [[data_overview::HiSeq data 2| HiSeq data SW018_S1_L007]] | 2x100bp reads from a single HiSeq lane with 597bp insert size | | ||
- | | [[data_overview::HiSeq data 1| HiSeq data SW019_S2_L008]] | 2x100bp reads from a single HiSeq lane with 374bp insert size | | ||
- | | [[data_overview::UCSF_BS-MK | UCSF BS-MK data]] | 2x250bp reads with 450-650bp insert size | | ||
- | | [[data_overview::UCSF_BS-tag | UCSF BS-tag data]] | 2x250bp reads with 375-575bp insert size | | ||
- | | [[data_overview::UCSF_SW018 | UCSF SW018 Data]] | 2x250bp reads from SW018 library | | ||
- | | [[data_overview::UCSF_SW019 | UCSF SW019 Data]] | 2x250bp reads from SW019 library | | ||
- | | [[data_overview::Lucigen mate-pair data]] | 2x300bp reads, expected insert size is greater than 1kb | | ||
- | | [[data_overview::SW041 | SW041 mate-pair data ]] | 2x76bp reads, expected insert size is 3-4kb | | ||
- | | [[data_overview::SW042 | SW042 mate-pair data ]] | 2x76bp reads, expected insert size is 5-6kb | | ||
- | | [[data_overview::RNA-Seq | RNA-Seq data]] | Preliminary data generated as of 06/12/15 | | ||
- | |||
| Data set | Description | Location | | | Data set | Description | Location | | ||
| [[data_overview::2015::MiSeq data| MiSeq data SW019_S1_L001]] | 2x300bp reads from a single MiSeq lane | | | [[data_overview::2015::MiSeq data| MiSeq data SW019_S1_L001]] | 2x300bp reads from a single MiSeq lane | | ||
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==== Analysis of processed data==== | ==== Analysis of processed data==== | ||
- | [[data_overview::analysis::kmergenie | kmergenie Output Showing Kmer Distribution ]] | + | [[data_overview::2015::analysis::kmergenie | kmergenie Output Showing Kmer Distribution ]] |
- | [[data_overview::analysis::preqc | PreqC of adapter-trimmed and PCR duplicate-removed data ]] | + | [[data_overview::2015::analysis::preqc | PreqC of adapter-trimmed and PCR duplicate-removed data ]] |
- | [[data_overview::analysis::fastQC | FastQC of adapter-trimmed and PCR duplicate-removed data ]] | + | [[data_overview::2015::analysis::fastQC | FastQC of adapter-trimmed and PCR duplicate-removed data ]] |
===== 2011 Data ===== | ===== 2011 Data ===== | ||