data_overview:2015:rna-seq
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data_overview:2015:rna-seq [2015/08/31 20:48] ceisenhart |
data_overview:2015:rna-seq [2015/09/02 16:11] ceisenhart Adding backlinks |
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| ====== Banana Slug RNA-Seq ====== | ====== Banana Slug RNA-Seq ====== | ||
| + | To see how we are using this data, please view [[https://banana-slug.soe.ucsc.edu/post-assembly_analysis:2015:rna_scaffolding | this page]. | ||
| ===== Raw data ===== | ===== Raw data ===== | ||
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| ===== Processed data ===== | ===== Processed data ===== | ||
| - | FastQC reports for the processed files can be found through the ftp links below. | ||
| [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastUniq/ | fastUniq]] fastUniq removes PCR duplicates. | [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastUniq/ | fastUniq]] fastUniq removes PCR duplicates. | ||
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| [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastUniq/fastqQuality | fastUniq + fastqQuality ]] fastqQuality removes low quality reads. | [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastUniq/fastqQuality | fastUniq + fastqQuality ]] fastqQuality removes low quality reads. | ||
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| + | FastQC reports for the processed files can be found in the 'fastQC' subdirectories. | ||
data_overview/2015/rna-seq.txt ยท Last modified: 2015/09/02 16:12 by ceisenhart
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