data_overview:2015:rna-seq
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data_overview:2015:rna-seq [2015/08/03 18:20] ceisenhart Added new files |
data_overview:2015:rna-seq [2015/08/31 20:42] ceisenhart |
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| ===== Sequencing data ===== | ===== Sequencing data ===== | ||
| | Library | Run | Location | Notes | | | Library | Run | Location | Notes | | ||
| - | | - | - | /hive/users/ceisenhart/rnaSeq | Data is currently private, Will be made public asap (waiting on documentation) | | + | | - | - | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/ | | |
| + | Total = 56G Raw unprocessed data | ||
| - | ===== Files ===== | + | ===== FastQC ===== |
| - | | File | Size | Reads| | + | The fastQC reports for the raw files can be found online here [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastQC/ | raw fastqc reports]]. |
| - | |BS-AL-SmartSeq_S9_L005_R1_001.fastq.gz | 2.8G | | | + | |
| - | |BS-AL-SmartSeq_S9_L005_R2_001.fastq.gz | 2.9G | | | + | |
| - | |BS-AL-Tn5Prime_S7_L005_R1_001.fastq.gz | 365M | | | + | |
| - | |BS-AL-Tn5Prime_S7_L005_R2_001.fastq.gz | 417M | | | + | |
| - | |BS-PA-SmartSeq_S10_L005_R1_001.fastq.gz | 2.4G | | | + | |
| - | |BS-PA-SmartSeq_S10_L005_R2_001.fastq.gz | 2.4G | | | + | |
| - | |BS-PA-Tn5Prime_S6_L005_R1_001.fastq.gz | 1.1G | | | + | |
| - | |BS-PA-Tn5Prime_S6_L005_R2_001.fastq.gz | 1.2G | | | + | |
| - | |BS-P-SmartSeq_S11_L005_R1_001.fastq.gz | 2.9G | | | + | |
| - | |BS-P-SmartSeq_S11_L005_R2_001.fastq.gz | 3.0G | | | + | |
| - | |BS-P-Tn5Prime_S8_L005_R1_001.fastq.gz | 784M | | | + | |
| - | |BS-P-Tn5Prime_S8_L005_R2_001.fastq.gz | 864M | | | + | |
| + | ===== Processed data ===== | ||
| + | [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastUniq/ | fastUniq]] | ||
| + | [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastUniq/fastqQuality | fastqQuality ]] | ||
| Libraries are completed. Preliminary data is undergoing analysis. | Libraries are completed. Preliminary data is undergoing analysis. | ||
data_overview/2015/rna-seq.txt · Last modified: 2015/09/02 16:12 by ceisenhart
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