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data_overview:2015:rna-seq [2015/08/03 18:12] ceisenhart |
data_overview:2015:rna-seq [2015/08/31 20:39] ceisenhart |
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====== Banana Slug RNA-Seq ====== | ====== Banana Slug RNA-Seq ====== | ||
+ | ===== Sequencing data ===== | ||
+ | | Library | Run | Location | Notes | | ||
+ | | - | - | http://genome-test.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/ | | | ||
+ | |||
===== Files ===== | ===== Files ===== | ||
| File | Size | Reads| | | File | Size | Reads| | ||
- | | SW019_S1_L001_R1_001.fastq | 17G | 27,268,723 | | + | |BS-AL-SmartSeq_S9_L005_R1_001.fastq.gz | 7.4G | | |
+ | |BS-AL-SmartSeq_S9_L005_R2_001.fastq.gz | 7.4G | | | ||
+ | |BS-AL-Tn5Prime_S7_L005_R1_001.fastq.gz | 1.1G | | | ||
+ | |BS-AL-Tn5Prime_S7_L005_R2_001.fastq.gz | 1.1G | | | ||
+ | |BS-PA-SmartSeq_S10_L005_R1_001.fastq.gz | 7.8G | | | ||
+ | |BS-PA-SmartSeq_S10_L005_R2_001.fastq.gz | 7.8G | | | ||
+ | |BS-PA-Tn5Prime_S6_L005_R1_001.fastq.gz | 2.2G | | | ||
+ | |BS-PA-Tn5Prime_S6_L005_R2_001.fastq.gz | 2.2G | | | ||
+ | |BS-P-SmartSeq_S11_L005_R1_001.fastq.gz | 6.5G | | | ||
+ | |BS-P-SmartSeq_S11_L005_R2_001.fastq.gz | 6.5G | | | ||
+ | |BS-P-Tn5Prime_S8_L005_R1_001.fastq.gz | 3.0G | | | ||
+ | |BS-P-Tn5Prime_S8_L005_R2_001.fastq.gz | 3.0G | | | ||
+ | Total = 56G Raw unprocessed data | ||
+ | ===== FastQC ===== | ||
+ | The fastQC reports for the above files can be found online here [[http://hgwdev-ceisenhart.cse.ucsc.edu/~charles/BME235_backup/Data/2015/rnaSeq/fastQC/ | raw fastqc reports]]. | ||
+ | |||
+ | ===== Processed data ===== | ||
+ | [[data_overview:2015:rna-seq:fastUniq | fastUniq ]] | ||
+ | [[data_overview:2015:rna-seq:fastUniq | fastUniq + fastqQuality ]] | ||
Libraries are completed. Preliminary data is undergoing analysis. | Libraries are completed. Preliminary data is undergoing analysis. |