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contributors:team_5_page [2015/06/08 22:59] ceisenhart [Fasta assemblies] |
contributors:team_5_page [2015/07/22 21:19] 169.233.230.98 ↷ Links adapted because of a move operation |
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Discovar //de novo// is a next generation sequence assembly program. The program was developed by the Broad Institute and was released late in 2014. Discovar //de novo// is designed for 250 bp long illumina reads with the PCR duplicates and adaptor sequences removed. The following webpage contains the manual as provided by the Broad Institute (http://www.broadinstitute.org/software/discovar/blog/): | Discovar //de novo// is a next generation sequence assembly program. The program was developed by the Broad Institute and was released late in 2014. Discovar //de novo// is designed for 250 bp long illumina reads with the PCR duplicates and adaptor sequences removed. The following webpage contains the manual as provided by the Broad Institute (http://www.broadinstitute.org/software/discovar/blog/): | ||
- | [[Discovar //de novo// manual:Discovar de novo manual]]. | + | [[team_5_page:discovar_de_novo_manual]]. |
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|UCSF50%run | 1.9 G | 1,839,371,352 | 1,126,557 | 1,632| 55,757 | 3,979 | 80,721 | 137,959,107 | | |UCSF50%run | 1.9 G | 1,839,371,352 | 1,126,557 | 1,632| 55,757 | 3,979 | 80,721 | 137,959,107 | | ||
|firstFullRun | 2.2G | 2,245,788,654 | 1,450,447 | 1,548 | 153,999 | 10,634 | 118,545 | 972,798,485 | | |firstFullRun | 2.2G | 2,245,788,654 | 1,450,447 | 1,548 | 153,999 | 10,634 | 118,545 | 972,798,485 | | ||
- | |Kolossus full run | 2.4G | 2,395,797,282 | 1,843,153 | 1299 | 129,831 | 10,634 | 113,978 | 1,106,140,476 | | + | |Kolossus full run | 2.4G | 2,395,797,282 | 1,843,153 | 1299 | 129,831 | 12,549 | 113,978 | 1,106,140,476 | |
The absolute path to our latest assembly in .fasta format is; | The absolute path to our latest assembly in .fasta format is; | ||
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See instructions for setting up the hub here, | See instructions for setting up the hub here, | ||
- | [[banana_slug_genome_browser |Banana slug browser ]] | + | [[:banana_slug_genome_browser|Banana slug browser ]] |