Banana Slug Genomics

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READING READS Lib1:


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	Total inserted pairs = 1449494 


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READING READS Lib2:


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	Total inserted pairs = 774725 


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LIBRARY Lib1 STATS:


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MAPPING READS TO CONTIGS:


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	Number of single reads found on contigs = 1208432


	Number of read-pairs used for pairing contigs / total pairs = 482735 / 495142


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READ PAIRS STATS:


	Assembled pairs: 482735 (965470 sequences)


		Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 3500 +/-1750): 15831


		Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 279966


		Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 34234


		---


		Satisfied in distance/logic within a given contig pair (pre-scaffold): 139853


		Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 12851


		---


	Total satisfied: 155684	unsatisfied: 327051








	Estimated insert size statistics (based on 15831 pairs): 


		Mean insert size = 2101


		Median insert size = 2039





REPEATS: 


	Number of repeated edges = 8


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LIBRARY Lib2 STATS:


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MAPPING READS TO CONTIGS:


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	Number of single reads found on contigs = 759686


	Number of read-pairs used for pairing contigs / total pairs = 291352 / 322318


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READ PAIRS STATS:


	Assembled pairs: 291352 (582704 sequences)


		Satisfied in distance/logic within contigs (i.e. -> <-, distance on target: 6500 +/-3250): 847


		Unsatisfied in distance within contigs (i.e. distance out-of-bounds): 170638


		Unsatisfied pairing logic within contigs (i.e. illogical pairing ->->, <-<- or <-->): 17248


		---


		Satisfied in distance/logic within a given contig pair (pre-scaffold): 100273


		Unsatisfied in distance within a given contig pair (i.e. calculated distances out-of-bounds): 2346


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	Total satisfied: 101120	unsatisfied: 190232








	Estimated insert size statistics (based on 847 pairs): 


		Mean insert size = 3668


		Median insert size = 3458





REPEATS: 


	Number of repeated edges = 3


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SUMMARY: 


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	Inserted contig file;


		Total number of contigs = 1126557


		Sum (bp) = 1839371352


			Total number of N's = 51400


			Sum (bp) no N's = 1839319952


		GC Content = 41.11%


		Max contig size = 55757


		Min contig size = 29


		Average contig size = 1632


		N25 = 5989


		N50 = 3531


		N75 = 1944





	After scaffolding Lib1:


		Total number of scaffolds = 1126514


		Sum (bp) = 1839488965


			Total number of N's = 169013


			Sum (bp) no N's = 1839319952


		GC Content = 41.11%


		Max scaffold size = 55757


		Min scaffold size = 29


		Average scaffold size = 1632


		N25 = 5990


		N50 = 3532


		N75 = 1944





	After scaffolding Lib2:


		Total number of scaffolds = 1126500


		Sum (bp) = 1839547327


			Total number of N's = 227375


			Sum (bp) no N's = 1839319952


		GC Content = 41.11%


		Max scaffold size = 55757


		Min scaffold size = 29


		Average scaffold size = 1632


		N25 = 5990


		N50 = 3532


		N75 = 1944





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Banana Slug Genomics

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