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contributors:team_5:50_ucsf_blast [2015/05/18 05:07]
gepoliano [Scafold length 30568]
contributors:team_5:50_ucsf_blast [2015/09/02 16:22] (current)
ceisenhart ↷ Page moved from team_5_page:50_ucsf_blast to contributors:team_5:50_ucsf_blast
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-======50% UCSF Libraries BLAST results, ​1-15 top length ​scafolds======+======50% UCSF Libraries BLAST results, ​per scaffold ​length====== 
 +=====Database:​ Nucleotide collection (nt)===== 
 +=====Sequences producing significant alignments, using scafold as query===== 
 ====Scafold length 34857==== ====Scafold length 34857====
 RID: NJSGMYXE01R ​ RID: NJSGMYXE01R ​
Line 44: Line 47:
 RID:​NJWR2G3Z01R RID:​NJWR2G3Z01R
  
-No significant similarity found. +====Scafold ​length 29805====
-======50% UCSF Libraries BLAST results, 15-30 top length scafolds====== +
-=====Database:​ Nucleotide collection (nt)===== +
-=====Sequences producing significant alignments, using scafold as query===== +
- +
-====15th scafold, ​length 29805====+
 RID: NDAHDY9901R ​ RID: NDAHDY9901R ​
 |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
Line 57: Line 55:
 |Trichobilharzia regenti genome assembly T_regenti_v1_0_4,​ scaffold TRE_scaffold0004144|56.5|56.5|0%|0.027|100%|LL004144.1| |Trichobilharzia regenti genome assembly T_regenti_v1_0_4,​ scaffold TRE_scaffold0004144|56.5|56.5|0%|0.027|100%|LL004144.1|
  
-====16th scafold, ​length 29232====+====Scafold ​length 29232====
 RID: NDDMNPMR015 RID: NDDMNPMR015
  
Line 69: Line 67:
 |Smeagol phillipensis voucher EED-Phy-878 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917229.1| |Smeagol phillipensis voucher EED-Phy-878 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917229.1|
  
-====17th scafold, ​length 29174====+====Scafold ​length 29174====
 RID: NF02SUXK01R RID: NF02SUXK01R
 |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
Line 75: Line 73:
  
  
-====18th scafold, ​length 29126====+====Scafold ​length 29126====
 RID: NFBJG2PP01R RID: NFBJG2PP01R
 |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
Line 81: Line 79:
  
  
-====19th scafold, ​length 22322====+====Scafold ​length 22322====
 RID: NFBJG2PP01R RID: NFBJG2PP01R
 |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
Line 89: Line 87:
 |Elaeophora elaphi genome assembly E_elaphi, scaffold EEL_scaffold0000026|52.8|52.8|0%|0.33|100%|LL710301.1| |Elaeophora elaphi genome assembly E_elaphi, scaffold EEL_scaffold0000026|52.8|52.8|0%|0.33|100%|LL710301.1|
  
-====20th scafold, ​length 28130====+====Scafold ​length 28130====
  
 RID: NFP99B6K015 RID: NFP99B6K015
Line 95: Line 93:
 No significant similarity found. No significant similarity found.
  
-====21th scafold, ​length 27845====+====Scafold ​length 27845====
  
 RID: NFUV0CRE014 RID: NFUV0CRE014
  
 No significant similarity found. No significant similarity found.
contributors/team_5/50_ucsf_blast.1431925665.txt.gz · Last modified: 2015/05/18 05:07 by gepoliano