contributors:team_5:50_ucsf_blast
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contributors:team_5:50_ucsf_blast [2015/05/18 04:11] gepoliano [Scafold length 33799] |
contributors:team_5:50_ucsf_blast [2015/09/02 16:22] (current) ceisenhart ↷ Page moved from team_5_page:50_ucsf_blast to contributors:team_5:50_ucsf_blast |
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| - | ======50% UCSF Libraries BLAST results, 1-15 top length scafolds====== | + | ======50% UCSF Libraries BLAST results, per scaffold length====== |
| + | =====Database: Nucleotide collection (nt)===== | ||
| + | =====Sequences producing significant alignments, using scafold as query===== | ||
| ====Scafold length 34857==== | ====Scafold length 34857==== | ||
| RID: NJSGMYXE01R | RID: NJSGMYXE01R | ||
| Line 7: | Line 10: | ||
| ====Scafold length 33799==== | ====Scafold length 33799==== | ||
| - | RID: NJSGMYXE01R | + | RID: NJTP1U4G01R |
| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| |Branchiostoma floridae hypothetical protein, mRNA|150|150|0%|1e-30|88%|XM_002589018.1| | |Branchiostoma floridae hypothetical protein, mRNA|150|150|0%|1e-30|88%|XM_002589018.1| | ||
| |PREDICTED: Vollenhovia emeryi serine/threonine-protein kinase 3 (LOC105564272), transcript variant X2, mRNA|128|128|0%|6e-24|81%|XM_012016531.1| | |PREDICTED: Vollenhovia emeryi serine/threonine-protein kinase 3 (LOC105564272), transcript variant X2, mRNA|128|128|0%|6e-24|81%|XM_012016531.1| | ||
| |Salmo salar Serine/threonine-protein kinase 4 (stk4), mRNA|122|122|0%|3e-22|80%|NM_001173614.1| | |Salmo salar Serine/threonine-protein kinase 4 (stk4), mRNA|122|122|0%|3e-22|80%|NM_001173614.1| | ||
| - | ======50% UCSF Libraries BLAST results, 15-30 top length scafolds====== | + | |PREDICTED: Saccoglossus kowalevskii serine/threonine-protein kinase 3-like (LOC100377733), mRNA|108|108|0%|8e-18|86%|XM_002736660.2| |
| - | =====Database: Nucleotide collection (nt)===== | + | |PREDICTED: Oryctolagus cuniculus serine/threonine kinase 4 (STK4), mRNA|104|104|0%|1e-16|93%|XM_002721229.2| |
| - | =====Sequences producing significant alignments, using scafold as query===== | + | |Drosophila erecta GG20903 (Dere\GG20903), mRNA|95.3|95.3|0%|6e-14|84%|XM_001974787.1| |
| + | |PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X2, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1| | ||
| + | |PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X1, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1| | ||
| + | |PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X2, mRNA| 87.9 |87.9 |0%| 1e-11 |90%| XM_008529631.1| | ||
| + | |PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X1, mRNA| 87.9 |87.9 |0%| 1e-11| 90%| XM_008529630.1| | ||
| + | |||
| + | ====Scafold length 31751==== | ||
| + | RID:NJV6310E015 | ||
| + | |||
| + | No significant similarity found. | ||
| + | |||
| + | ====Scafold length 31617==== | ||
| + | RID: NJVT1GFB01R | ||
| + | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| + | |Coniosporium apollinis CBS 100218 STE/STE20/PAKA protein kinase partial mRNA |54.7 |54.7 |0% |0.10| 100% |XM_007786412.1| | ||
| + | |PREDICTED: Sarcophilus harrisii calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA |52.8 |52.8| 0%| 0.37 |100% |XM_003756161.2| | ||
| + | |||
| + | ====Scafold length 30696==== | ||
| + | RID: NJW1NJ9R014 | ||
| + | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|**Notes**| | ||
| + | |Arion vulgaris clone ALU_06_4 microsatellite sequence |63.9 |63.9 |0% |2e-04 |87% |KP247478.1|Land slug, Spanish slug| | ||
| + | |||
| + | ====Scafold length 30568==== | ||
| + | RID:NJWJRVZD01R | ||
| + | |||
| + | No significant similarity found. | ||
| + | |||
| + | ====Scafold length 30093==== | ||
| + | RID:NJWR2G3Z01R | ||
| - | ====15th scafold, length 29805==== | + | ====Scafold length 29805==== |
| RID: NDAHDY9901R | RID: NDAHDY9901R | ||
| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| Line 24: | Line 55: | ||
| |Trichobilharzia regenti genome assembly T_regenti_v1_0_4, scaffold TRE_scaffold0004144|56.5|56.5|0%|0.027|100%|LL004144.1| | |Trichobilharzia regenti genome assembly T_regenti_v1_0_4, scaffold TRE_scaffold0004144|56.5|56.5|0%|0.027|100%|LL004144.1| | ||
| - | ====16th scafold, length 29232==== | + | ====Scafold length 29232==== |
| RID: NDDMNPMR015 | RID: NDDMNPMR015 | ||
| Line 36: | Line 67: | ||
| |Smeagol phillipensis voucher EED-Phy-878 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917229.1| | |Smeagol phillipensis voucher EED-Phy-878 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917229.1| | ||
| - | ====17th scafold, length 29174==== | + | ====Scafold length 29174==== |
| RID: NF02SUXK01R | RID: NF02SUXK01R | ||
| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| Line 42: | Line 73: | ||
| - | ====18th scafold, length 29126==== | + | ====Scafold length 29126==== |
| RID: NFBJG2PP01R | RID: NFBJG2PP01R | ||
| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| Line 48: | Line 79: | ||
| - | ====19th scafold, length 22322==== | + | ====Scafold length 22322==== |
| RID: NFBJG2PP01R | RID: NFBJG2PP01R | ||
| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| Line 56: | Line 87: | ||
| |Elaeophora elaphi genome assembly E_elaphi, scaffold EEL_scaffold0000026|52.8|52.8|0%|0.33|100%|LL710301.1| | |Elaeophora elaphi genome assembly E_elaphi, scaffold EEL_scaffold0000026|52.8|52.8|0%|0.33|100%|LL710301.1| | ||
| - | ====20th scafold, length 28130==== | + | ====Scafold length 28130==== |
| RID: NFP99B6K015 | RID: NFP99B6K015 | ||
| Line 62: | Line 93: | ||
| No significant similarity found. | No significant similarity found. | ||
| - | ====21th scafold, length 27845==== | + | ====Scafold length 27845==== |
| RID: NFUV0CRE014 | RID: NFUV0CRE014 | ||
| No significant similarity found. | No significant similarity found. | ||
contributors/team_5/50_ucsf_blast.1431922268.txt.gz · Last modified: 2015/05/18 04:11 by gepoliano
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