Banana Slug Genomics

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
======50% UCSF Libraries BLAST results, 1-15 top length scafolds======
====Scafold length 34857====
RID: NJSGMYXE01R 
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|PREDICTED: Cicer arietinum tryptophan synthase beta chain 2, chloroplastic-like (LOC101505552), mRNA|54.7|54.7|0%|0.11|100%|XM_004499989.1|
|Strongyloides papillosus genome assembly S_papillosus_LIN, scaffold SPAL_contig0000001|52.8|52.8|0%|0.40|100%|LM525560.1|

====Scafold length 33799====
RID: NJTP1U4G01R  
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|Branchiostoma floridae hypothetical protein, mRNA|150|150|0%|1e-30|88%|XM_002589018.1|
|PREDICTED: Vollenhovia emeryi serine/threonine-protein kinase 3 (LOC105564272), transcript variant X2, mRNA|128|128|0%|6e-24|81%|XM_012016531.1|
|Salmo salar Serine/threonine-protein kinase 4 (stk4), mRNA|122|122|0%|3e-22|80%|NM_001173614.1|
|PREDICTED: Saccoglossus kowalevskii serine/threonine-protein kinase 3-like (LOC100377733), mRNA|108|108|0%|8e-18|86%|XM_002736660.2|
|PREDICTED: Oryctolagus cuniculus serine/threonine kinase 4 (STK4), mRNA|104|104|0%|1e-16|93%|XM_002721229.2|
|Drosophila erecta GG20903 (Dere\GG20903), mRNA|95.3|95.3|0%|6e-14|84%|XM_001974787.1|
|PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X2, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1|
|PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X1, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1|
|PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X2, mRNA|	87.9	|87.9	|0%|	1e-11	|90%|	XM_008529631.1|
|PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X1, mRNA|	87.9	|87.9	|0%|	1e-11|	90%|	XM_008529630.1|

====Scafold length 31751====
RID:NJV6310E015

No significant similarity found.

====Scafold length 31617====
RID: NJVT1GFB01R  
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|Coniosporium apollinis CBS 100218 STE/STE20/PAKA protein kinase partial mRNA	|54.7	|54.7	|0%	|0.10|	100%	|XM_007786412.1|
|PREDICTED: Sarcophilus harrisii calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA	|52.8	|52.8|	0%|	0.37	|100%	|XM_003756161.2|

====Scafold length 30696====
RID: NJW1NJ9R014 
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|**Notes**|
|Arion vulgaris clone ALU_06_4 microsatellite sequence	|63.9	|63.9	|0%	|2e-04	|87%	|KP247478.1|Land slug, Spanish slug|
======50% UCSF Libraries BLAST results, 15-30 top length scafolds======
=====Database: Nucleotide collection (nt)=====
=====Sequences producing significant alignments, using scafold as query=====

====15th scafold, length 29805====
RID: NDAHDY9901R 
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|PREDICTED: Aplysia californica UPF0047 protein C4A8.02c-like (LOC101857119), transcript variant X2, mRNA|111|111|0%|6e-19|83%|XM_005099372.1|
|PREDICTED: Aplysia californica UPF0047 protein C4A8.02c-like (LOC101857119), transcript variant X1, mRNA|111|111|0%|6e-19|83%|XM_005099371.1|
|Helix pomatia Cd-specific metallothionein gene, complete cds|99|183|0%|4e-15|81%|FJ755002.1|
|Trichobilharzia regenti genome assembly T_regenti_v1_0_4, scaffold TRE_scaffold0004144|56.5|56.5|0%|0.027|100%|LL004144.1|

====16th scafold, length 29232====
RID: NDDMNPMR015

|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|PREDICTED: Aplysia californica uncharacterized LOC101861265 (LOC101861265), mRNA|211|211|0%|5e-49|85%|XM_005113378.1|
|PREDICTED: Aplysia californica uncharacterized LOC101858071 (LOC101858071), mRNA|211|211|0%|5e-49|85%|XM_005110396.1|
|PREDICTED: Aplysia californica uncharacterized LOC101857601 (LOC101857601), mRNA|211|211|0%|5e-49|85%|XM_005108520.1|
|Austropeplea tomentosa voucher AM:04_27_07 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|HQ156217.1|
|Prietocolella barbarae voucher AM:05_27_07 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|HQ156216.1|
|Latia neritoides voucher MNB 104.551 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917245.1|
|Smeagol phillipensis voucher EED-Phy-878 28S ribosomal RNA gene, partial sequence|211|211|0%|5e-49|85%|FJ917229.1|

====17th scafold, length 29174====
RID: NF02SUXK01R
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|Abax parallelepipedus microsatellite DNA, clone Apa14224|97.1|97.1|0%|2e-14|88%|AJ510195.1|


====18th scafold, length 29126====
RID: NFBJG2PP01R
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|Biomphalaria glabrata BAC clone BG_BBa-137L24 from chromosome unknown, complete sequence|56.5|56.5|0%|0.026|97%|AC233165.2|


====19th scafold, length 22322====
RID: NFBJG2PP01R
|**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|
|Micromenetus dilatatus 28S large subunit ribosomal RNA gene, partial sequence|60.2|60.2|0%|0.002|79%|DQ256735.1|
|Arion vulgaris clone ALU_06_4 microsatellite sequence|54.7|54.7|0%|0.091|100%|KP247478.1|
|Glyptophysa gibbosa 28S large subunit ribosomal RNA gene, partial sequence|54.7|54.7|0%|0.091|100%|DQ256736.1|
|Elaeophora elaphi genome assembly E_elaphi, scaffold EEL_scaffold0000026|52.8|52.8|0%|0.33|100%|LL710301.1|

====20th scafold, length 28130====

RID: NFP99B6K015

No significant similarity found.

====21th scafold, length 27845====

RID: NFUV0CRE014

No significant similarity found.
Banana Slug Genomics

User Tools

Site Tools

Page Tools
