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contributors:team_5:50_ucsf_blast [2015/05/18 04:42] gepoliano [Scafold length 31751] |
contributors:team_5:50_ucsf_blast [2015/05/18 05:14] gepoliano |
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- | ======50% UCSF Libraries BLAST results, 1-15 top length scafolds====== | + | ======50% UCSF Libraries BLAST results, per scaffold length====== |
+ | =====Database: Nucleotide collection (nt)===== | ||
+ | =====Sequences producing significant alignments, using scafold as query===== | ||
====Scafold length 34857==== | ====Scafold length 34857==== | ||
RID: NJSGMYXE01R | RID: NJSGMYXE01R | ||
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No significant similarity found. | No significant similarity found. | ||
- | ======50% UCSF Libraries BLAST results, 15-30 top length scafolds====== | + | |
- | =====Database: Nucleotide collection (nt)===== | + | ====Scafold length 31617==== |
- | =====Sequences producing significant alignments, using scafold as query===== | + | RID: NJVT1GFB01R |
+ | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
+ | |Coniosporium apollinis CBS 100218 STE/STE20/PAKA protein kinase partial mRNA |54.7 |54.7 |0% |0.10| 100% |XM_007786412.1| | ||
+ | |PREDICTED: Sarcophilus harrisii calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA |52.8 |52.8| 0%| 0.37 |100% |XM_003756161.2| | ||
+ | |||
+ | ====Scafold length 30696==== | ||
+ | RID: NJW1NJ9R014 | ||
+ | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|**Notes**| | ||
+ | |Arion vulgaris clone ALU_06_4 microsatellite sequence |63.9 |63.9 |0% |2e-04 |87% |KP247478.1|Land slug, Spanish slug| | ||
+ | |||
+ | ====Scafold length 30568==== | ||
+ | RID:NJWJRVZD01R | ||
+ | |||
+ | No significant similarity found. | ||
+ | |||
+ | ====Scafold length 30093==== | ||
+ | RID:NJWR2G3Z01R | ||
====15th scafold, length 29805==== | ====15th scafold, length 29805==== |