contributors:team_5:50_ucsf_blast
Differences
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contributors:team_5:50_ucsf_blast [2015/05/18 04:41] gepoliano [Scafold length 33799] |
contributors:team_5:50_ucsf_blast [2015/05/18 05:14] gepoliano |
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| - | ======50% UCSF Libraries BLAST results, 1-15 top length scafolds====== | + | ======50% UCSF Libraries BLAST results, per scaffold length====== |
| + | =====Database: Nucleotide collection (nt)===== | ||
| + | =====Sequences producing significant alignments, using scafold as query===== | ||
| ====Scafold length 34857==== | ====Scafold length 34857==== | ||
| RID: NJSGMYXE01R | RID: NJSGMYXE01R | ||
| Line 22: | Line 25: | ||
| ====Scafold length 31751==== | ====Scafold length 31751==== | ||
| RID:NJV6310E015 | RID:NJV6310E015 | ||
| + | |||
| No significant similarity found. | No significant similarity found. | ||
| - | ======50% UCSF Libraries BLAST results, 15-30 top length scafolds====== | + | |
| - | =====Database: Nucleotide collection (nt)===== | + | ====Scafold length 31617==== |
| - | =====Sequences producing significant alignments, using scafold as query===== | + | RID: NJVT1GFB01R |
| + | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| + | |Coniosporium apollinis CBS 100218 STE/STE20/PAKA protein kinase partial mRNA |54.7 |54.7 |0% |0.10| 100% |XM_007786412.1| | ||
| + | |PREDICTED: Sarcophilus harrisii calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA |52.8 |52.8| 0%| 0.37 |100% |XM_003756161.2| | ||
| + | |||
| + | ====Scafold length 30696==== | ||
| + | RID: NJW1NJ9R014 | ||
| + | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|**Notes**| | ||
| + | |Arion vulgaris clone ALU_06_4 microsatellite sequence |63.9 |63.9 |0% |2e-04 |87% |KP247478.1|Land slug, Spanish slug| | ||
| + | |||
| + | ====Scafold length 30568==== | ||
| + | RID:NJWJRVZD01R | ||
| + | |||
| + | No significant similarity found. | ||
| + | |||
| + | ====Scafold length 30093==== | ||
| + | RID:NJWR2G3Z01R | ||
| ====15th scafold, length 29805==== | ====15th scafold, length 29805==== | ||
contributors/team_5/50_ucsf_blast.txt · Last modified: 2015/09/02 16:22 by ceisenhart
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