contributors:team_5:50_ucsf_blast
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contributors:team_5:50_ucsf_blast [2015/05/18 04:00] gepoliano |
contributors:team_5:50_ucsf_blast [2015/05/18 05:07] gepoliano [Scafold length 30568] |
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| |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| |PREDICTED: Cicer arietinum tryptophan synthase beta chain 2, chloroplastic-like (LOC101505552), mRNA|54.7|54.7|0%|0.11|100%|XM_004499989.1| | |PREDICTED: Cicer arietinum tryptophan synthase beta chain 2, chloroplastic-like (LOC101505552), mRNA|54.7|54.7|0%|0.11|100%|XM_004499989.1| | ||
| - | |Strongyloides papillosus genome assembly S_papillosus_LIN, scaffold SPAL_contig0000001|52.8|52.8|0.40%|6e-19|83%|XM_005099371.1| | + | |Strongyloides papillosus genome assembly S_papillosus_LIN, scaffold SPAL_contig0000001|52.8|52.8|0%|0.40|100%|LM525560.1| |
| - | |Helix pomatia Cd-specific metallothionein gene, complete cds|99|183|0%|4e-15|81%|FJ755002.1| | + | |
| - | |Trichobilharzia regenti genome assembly T_regenti_v1_0_4, scaffold TRE_scaffold0004144|56.5|56.5|0%|0.027|100%|LL004144.1| | + | ====Scafold length 33799==== |
| + | RID: NJTP1U4G01R | ||
| + | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| + | |Branchiostoma floridae hypothetical protein, mRNA|150|150|0%|1e-30|88%|XM_002589018.1| | ||
| + | |PREDICTED: Vollenhovia emeryi serine/threonine-protein kinase 3 (LOC105564272), transcript variant X2, mRNA|128|128|0%|6e-24|81%|XM_012016531.1| | ||
| + | |Salmo salar Serine/threonine-protein kinase 4 (stk4), mRNA|122|122|0%|3e-22|80%|NM_001173614.1| | ||
| + | |PREDICTED: Saccoglossus kowalevskii serine/threonine-protein kinase 3-like (LOC100377733), mRNA|108|108|0%|8e-18|86%|XM_002736660.2| | ||
| + | |PREDICTED: Oryctolagus cuniculus serine/threonine kinase 4 (STK4), mRNA|104|104|0%|1e-16|93%|XM_002721229.2| | ||
| + | |Drosophila erecta GG20903 (Dere\GG20903), mRNA|95.3|95.3|0%|6e-14|84%|XM_001974787.1| | ||
| + | |PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X2, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1| | ||
| + | |PREDICTED: Spermophilus tridecemlineatus serine/threonine kinase 4 (Stk4), transcript variant X1, mRNA|89.8|89.8|0%|3e-12|78%|XM_005325287.1| | ||
| + | |PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X2, mRNA| 87.9 |87.9 |0%| 1e-11 |90%| XM_008529631.1| | ||
| + | |PREDICTED: Equus przewalskii serine/threonine kinase 4 (STK4), transcript variant X1, mRNA| 87.9 |87.9 |0%| 1e-11| 90%| XM_008529630.1| | ||
| + | |||
| + | ====Scafold length 31751==== | ||
| + | RID:NJV6310E015 | ||
| + | |||
| + | No significant similarity found. | ||
| + | |||
| + | ====Scafold length 31617==== | ||
| + | RID: NJVT1GFB01R | ||
| + | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**| | ||
| + | |Coniosporium apollinis CBS 100218 STE/STE20/PAKA protein kinase partial mRNA |54.7 |54.7 |0% |0.10| 100% |XM_007786412.1| | ||
| + | |PREDICTED: Sarcophilus harrisii calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA |52.8 |52.8| 0%| 0.37 |100% |XM_003756161.2| | ||
| + | |||
| + | ====Scafold length 30696==== | ||
| + | RID: NJW1NJ9R014 | ||
| + | |**Description**|**Max score**|**Total score**|**Query cover**|**E-value**|**Indent**|**Accession**|**Notes**| | ||
| + | |Arion vulgaris clone ALU_06_4 microsatellite sequence |63.9 |63.9 |0% |2e-04 |87% |KP247478.1|Land slug, Spanish slug| | ||
| + | |||
| + | ====Scafold length 30568==== | ||
| + | RID:NJWJRVZD01R | ||
| + | |||
| + | No significant similarity found. | ||
| + | |||
| + | ====Scafold length 30093==== | ||
| + | RID:NJWR2G3Z01R | ||
| + | |||
| + | No significant similarity found. | ||
| ======50% UCSF Libraries BLAST results, 15-30 top length scafolds====== | ======50% UCSF Libraries BLAST results, 15-30 top length scafolds====== | ||
| =====Database: Nucleotide collection (nt)===== | =====Database: Nucleotide collection (nt)===== | ||
contributors/team_5/50_ucsf_blast.txt · Last modified: 2015/09/02 16:22 by ceisenhart
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