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--- contributors:team_4_page [2015/06/02 00:38]
emfeal [Installing ABySS]
+++ contributors:team_4_page [2015/07/18 20:52]
92.247.181.31 ↷ Links adapted because of a move operation
@@ Line 49: / Line 49: @@
 </code>
 ==== Notes on Installation ====
-  * the //-enable-maxk// is by default set to 64. Always ensure to set the max kmer is set to the smallest possible value that accommodates your target kmers so as to minimize ABySS's memory footprint.
+  * the //-enable-maxk// is by default set to 64. Always ensure the max kmer is set to the smallest possible value that accommodates your target kmers so as to minimize ABySS's memory footprint.
   * ensure that the CPPFLAGS specified directory holds the google sparsehash includes. Look for a warning in the ABySS compilation to be sure.
   * the boost libraries do not need to be compiled before installing.
@@ Line 103: / Line 103: @@
 </code>
 Note that the parallel version of ABySS requires two things in particular:
-  * The use of a [[parallel environment]] (PE) which can be selected using a qsub option.
+  * The use of a [[archive:parallel_environment]] (PE) which can be selected using a qsub option.
   * The //np// option of abyss-pe. The number of processes here must reflect the number included in the parallel environment option.
 The PE option in the script above:

Banana Slug Genomics