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contributors:team_4_page [2015/05/11 08:47] emfeal [Running ABySS] |
contributors:team_4_page [2015/05/11 08:56] emfeal [Running ABySS] |
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</code> | </code> | ||
Note that the parallel version of ABySS requires two things in particular: | Note that the parallel version of ABySS requires two things in particular: | ||
- | **(1)** the use of a parallel environment which can be selected using a qsub option. The parallel environment option in the script above: | + | - The use of a parallel environment which can be selected using a qsub option. The parallel environment option in the script above: |
<code> | <code> | ||
#$ -pe mpi 10 | #$ -pe mpi 10 | ||
Line 107: | Line 107: | ||
qconf -spl | qconf -spl | ||
</code> | </code> | ||
- | **(2)**the //np// option of abyss-pe. The number of processes here must reflect the number included in the parallel | + | - The //np// option of abyss-pe. The number of processes here must reflect the number included in the parallel environment option. |
- | environment option. | + | |
abyss-pe is a driver script implemented as a Makefile. Any option of make may be used with abyss-pe. Particularly useful options are: | abyss-pe is a driver script implemented as a Makefile. Any option of make may be used with abyss-pe. Particularly useful options are: |