contributors:team_4_page
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contributors:team_4_page [2015/05/08 02:25] JaredC [ABySS Programs] |
contributors:team_4_page [2015/05/08 02:52] JaredC |
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| * abyss-filtergraph: remove shim contigs from the overlap graph | * abyss-filtergraph: remove shim contigs from the overlap graph | ||
| * abyss-fixmate: fill the paired-end fields of SAM alignments | * abyss-fixmate: fill the paired-end fields of SAM alignments | ||
| - | * abyss-map: map reads to a reference sequence | + | * abyss-map: map reads to a reference sequence (BW transform) |
| * abyss-scaffold: scaffold contigs using distance estimates | * abyss-scaffold: scaffold contigs using distance estimates | ||
| * abyss-todot: convert graph formats and merge graphs | * abyss-todot: convert graph formats and merge graphs | ||
| + | New to Version 1.3.5 (Mar 05, 2013) | ||
| + | * abyss-mergepairs: Merges overlapping read pairs. | ||
| + | * abyss-layout: Layout contigs using the sequence overlap graph. | ||
| + | * abyss-samtobreak: Calculate contig and scaffold contiguity and correctness metrics. | ||
| + | New to Version 1.5.2 (Jul 10, 2014) | ||
| + | * konnector: fill the gaps between paired-end reads by building a Bloom filter de Bruijn graph and searching for paths between paired-end reads within the graph | ||
| + | * abyss-bloom: construct reusable bloom filter files for input to Konnector | ||
| =====ABySS pipeline===== | =====ABySS pipeline===== | ||
contributors/team_4_page.txt · Last modified: 2015/07/18 20:52 by 92.247.181.31
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