contributors:team_4_page
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contributors:team_4_page [2015/05/08 02:16] JaredC |
contributors:team_4_page [2015/05/08 02:19] JaredC |
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| =====ABySS parameters===== | =====ABySS parameters===== | ||
| - | Parameters of the driver script, abyss-pe | + | Parameters of the driver script, abyss-pe, and their [default value] |
| * a: maximum number of branches of a bubble [2] | * a: maximum number of branches of a bubble [2] | ||
| Line 55: | Line 55: | ||
| * E: minimum erosion k-mer coverage per strand [1] | * E: minimum erosion k-mer coverage per strand [1] | ||
| * j: number of threads [2] | * j: number of threads [2] | ||
| - | * k: size of k-mer (bp) | + | * k: size of k-mer (bp) [no default] |
| * l: minimum alignment length of a read (bp) [k] | * l: minimum alignment length of a read (bp) [k] | ||
| * m: minimum overlap of two unitigs (bp) [30] | * m: minimum overlap of two unitigs (bp) [30] | ||
contributors/team_4_page.txt · Last modified: 2015/07/18 20:52 by 92.247.181.31
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