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<code> [jolespin@campusrocks2 bin]$ ./sga rmdup --help Usage: sga rmdup [OPTION] ... READFILE Remove duplicate reads from the data set. -v, --verbose display verbose output --help display this help and exit -o, --out=FILE write the output to FILE (default: READFILE.rmdup.fa) -p, --prefix=PREFIX use PREFIX instead of the prefix of the reads filename for the input/output files -e, --error-rate the maximum error rate allowed to consider two sequences identical (default: exact matches required) -t, --threads=N use N threads (default: 1) -d, --sample-rate=N sample the symbol counts every N symbols in the FM-index. Higher values use significantly less memory at the cost of higher runtime. This value must be a power of 2 (default: 256) Report bugs to js18@sanger.ac.uk </code>
