contributors:team_3:merging_indexes
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contributors:team_3:merging_indexes [2015/04/20 19:35] chkan created |
contributors:team_3:merging_indexes [2015/07/28 06:01] (current) ceisenhart ↷ Page moved from merging_indexes to contributors:team_3:merging_indexes |
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| - | [code] | + | <code> |
| - | Distributed construction of an FM index from multiple input files | + | |
| - | jts edited this page on May 26, 2011 · 1 revision | + | **Distributed construction of an FM index from multiple input files** |
| - | Pages 11 | + | |
| - | Home | + | |
| - | ASQG Format | + | |
| - | Distributed construction of an FM index from multiple input files | + | |
| - | Example assembly workflow | + | |
| - | FAQ | + | |
| - | Indexing large data sets | + | |
| - | Parameter tuning | + | |
| - | Preqc | + | |
| - | Scaffolding multiple libraries | + | |
| - | SGA Design | + | |
| - | sga subprograms | + | |
| - | Clone this wiki locally | + | |
| - | Clone in Desktop | ||
| If your data sets consists of multiple files, you can construct the FM-index for each file separately then merge the indices together to obtain an index of the entire data. This requires much less memory than constructing an index from a single file containing the entire data set. For example, suppose your data consists of four files: | If your data sets consists of multiple files, you can construct the FM-index for each file separately then merge the indices together to obtain an index of the entire data. This requires much less memory than constructing an index from a single file containing the entire data set. For example, suppose your data consists of four files: | ||
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| sga correct -p final s_2_1.fastq | sga correct -p final s_2_1.fastq | ||
| sga correct -p final s_2_2.fastq | sga correct -p final s_2_2.fastq | ||
| - | [/code] | + | </code> |
contributors/team_3/merging_indexes.1429558529.txt.gz · Last modified: 2015/04/20 19:35 by chkan
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