Banana Slug Genomics

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
==== Run 1 contig/scaffold statistics ====

<-- Information for assembly Scaffold 'soapdenovo2_sparseGraph.scafSeq'.(cut_off_length < 100bp) -->

| Size_includeN | 2064665199 |
| Size_withoutN | 1974393478 |
| Scaffold_Num | 2030303 |

Mean_Size	1016

Median_Size	131

Longest_Seq	60333

Shortest_Seq	100

Singleton_Num	1617596
Average_length_of_break(N)_in_scaffold	44

Known_genome_size	NaN
Total_scaffold_length_as_percentage_of_known_genome_size	NaN

scaffolds>100 	1996626	98.34%
scaffolds>500 	493758	24.32%
scaffolds>1K  	381668	18.80%
scaffolds>10K 	35884	1.77%
scaffolds>100K	0	0.00%
scaffolds>1M  	0	0.00%

Nucleotide_A	587193873	28.44%
Nucleotide_C	410937132	19.90%
Nucleotide_G	402424364	19.49%
Nucleotide_T	573838109	27.79%
GapContent_N	90271721	4.37%
Non_ACGTN	0	0.00%
GC_Content	41.20%		(G+C)/(A+C+G+T)

N10	15739	10008
N20	11476	25568
N30	8922	46077
N40	7049	72179
N50	5554	105217
N60	4235	147751
N70	3007	205382
N80	1765	293730
N90	428	509432

NG50	NaN	NaN
N50_scaffold-NG50_scaffold_length_difference	NaN

<-- Information for assembly Contig 'soapdenovo2_sparseGraph.contig'.(cut_off_length < 100bp) -->

Size_includeN	2051251797
Size_withoutN	2051251797
Contig_Num	3854379
Mean_Size	532
Median_Size	171
Longest_Seq	22512
Shortest_Seq	100

Contig>100 	3819222	99.09%
Contig>500 	980997	25.45%
Contig>1K  	583671	15.14%
Contig>10K 	891	0.02%
Contig>100K	0	0.00%
Contig>1M  	0	0.00%

Nucleotide_A	616192468	30.04%
Nucleotide_C	432122415	21.07%
Nucleotide_G	415271256	20.24%
Nucleotide_T	587665658	28.65%
GapContent_N	0	0.00%
Non_ACGTN	0	0.00%
GC_Content	41.31%		(G+C)/(A+C+G+T)

N10	4396	35101
N20	3142	91078
N30	2400	166140
N40	1860	263478
N50	1425	389550
N60	1048	557252
N70	694	796148
N80	335	1214089
N90	149	2184169

NG50	NaN	NaN
N50_contig-NG50_contig_length_difference	NaN

Number_of_contigs_in_scaffolds	2236783
Number_of_contigs_not_in_scaffolds(Singleton)	1617596
Average_number_of_contigs_per_scaffold	5.4
Banana Slug Genomics

User Tools

Site Tools

Page Tools
